• R tutorials for the course BIOS1140
  • 1 Inferring Evolutionary Processes from Sequence Data
    • What to expect
    • Getting started
    • 1.1 Working with DNA sequence data
      • 1.1.1 Reading sequence data into R.
      • 1.1.2 Exploring DNA sequence data
      • 1.1.3 Calculating basic sequence statistics
    • 1.2 Working with a larger dataset
      • 1.2.1 Sample size and sequence statistics
      • 1.2.2 Inferring evolutionary processes using Tajima’s D
    • 1.3 Calculating statistics at the whole genome level
      • 1.3.1 Reading in variant data
      • 1.3.2 Calculating nucleotide diversity statistics across sliding windows
    • 1.4 Study questions
    • 1.5 Going further
  • Made with bookdown

1.5 Going further

  • A simple tutorial on using PopGenome for inference in R
  • Some more information on performing whole-genome analyses in PopGenome
  • More examples with PopGenome and also other R packages for sequence data